The exit status of the task that caused the workflow execution to fail was: 1.
The full error message was:
Error executing process > 'NFCORE_FETCHNGS:SRA:ASPERA_CLI (ERX1188904_ERR1109373)'
Caused by:
Process `NFCORE_FETCHNGS:SRA:ASPERA_CLI (ERX1188904_ERR1109373)` terminated with an error exit status (1)
Command executed:
ascp \
-QT -l 300m -P33001 \
-i $CONDA_PREFIX/etc/aspera/aspera_bypass_dsa.pem \
era-fasp@fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/003/ERR1109373/ERR1109373.fastq.gz \
ERX1188904_ERR1109373_1.fastq.gz
echo "9fd57225d6c07a31843276d6df9b15c0 ERX1188904_ERR1109373_1.fastq.gz" > ERX1188904_ERR1109373_1.fastq.gz.md5
md5sum -c ERX1188904_ERR1109373_1.fastq.gz.md5
ascp \
-QT -l 300m -P33001 \
-i $CONDA_PREFIX/etc/aspera/aspera_bypass_dsa.pem \
era-fasp@fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_1.fastq.gz \
ERX1188904_ERR1109373_2.fastq.gz
echo "5a62e8f785687dce890cfb4fe3e607f9 ERX1188904_ERR1109373_2.fastq.gz" > ERX1188904_ERR1109373_2.fastq.gz.md5
md5sum -c ERX1188904_ERR1109373_2.fastq.gz.md5
cat <<-END_VERSIONS > versions.yml
"NFCORE_FETCHNGS:SRA:ASPERA_CLI":
aspera_cli: $(ascli --version)
END_VERSIONS
Command exit status:
1
Command output:
Completed: 3K bytes transferred in 0 seconds
(47K bits/sec), in 1 file.
ERX1188904_ERR1109373_1.fastq.gz: FAILED
Command error:
Unable to find image 'quay.io/biocontainers/aspera-cli:4.14.0--hdfd78af_1' locally
4.14.0--hdfd78af_1: Pulling from biocontainers/aspera-cli
642efca944a0: Pulling fs layer
bd9ddc54bea9: Pulling fs layer
7b8e1e5ce0be: Pulling fs layer
bd9ddc54bea9: Verifying Checksum
bd9ddc54bea9: Download complete
642efca944a0: Download complete
642efca944a0: Pull complete
bd9ddc54bea9: Pull complete
7b8e1e5ce0be: Verifying Checksum
7b8e1e5ce0be: Download complete
7b8e1e5ce0be: Pull complete
Digest: sha256:07678dfe3a66d095861841dd147739d0acdfe4b96fca339d68acb3050f12aac2
Status: Downloaded newer image for quay.io/biocontainers/aspera-cli:4.14.0--hdfd78af_1
Completed: 3K bytes transferred in 0 seconds
(47K bits/sec), in 1 file.
ERX1188904_ERR1109373_1.fastq.gz: FAILED
md5sum: WARNING: 1 of 1 computed checksums did NOT match
Work dir:
/workspace/fetchngs/work/c5/4f02c6059fffd4648f62745f74f42c
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
nextflow run nf-core/fetchngs -profile docker --input ids.csv --outdir output --download_method aspera
0f0b67958c4853dabf8556e682b6a3791b9f6db5-b694-4ccb-b870-b3b1f8d63076https://github.com/nf-core/fetchngs, revision master (commit hash
8ec2d934f9301c818d961b1e4fdf7fc79610bdc5)
These plots give an overview of the distribution of resource usage for each process.
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